The recent change in Google Webmasters Tool was made only to classify the internal & external links to help the webmasters to know the actual backlinks coming from other domains. And it won’t affect our current SERP position. If you own ( domains verified under a single webmaster account ) a site that’s on a subdomain (such as property.sulekha.com ) and don’t own the root domain ( Sulekha.com ), you’ll still only see links from URLs starting with that subdomain ( property.sulekha.com )in your internal links, and all others( yellowpages.sulekha.com , foods.sulekha.com, Sulekha.com etc) will be categorized as external links. Google Webmasters Tool have made a few backend changes so that these numbers should be even more accurate for you. Source: http://goo.gl/NWZi9 For an example: Below is the link classification, only if you own(verify) all our sub-domains under a single webmaster account Links for property.sulekha.com ...
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